Traits | Units | N | Mean | SD | Min | Max |
---|---|---|---|---|---|---|
ADG100 | g | 562 | 617.64 | 44.29 | 428.19 | 745.53 |
D100 | day | 562 | 161.15 | 11.91 | 131.86 | 230.06 |
ADG115 | g | 562 | 645.94 | 53.15 | 455.86 | 795.59 |
D115 | day | 562 | 177.73 | 15.09 | 142.31 | 249.00 |
SSC | SNP no. | Physical size1) (Mb) | Mb/SNP | Linkage map2) (cM) | cM/SNP |
---|---|---|---|---|---|
1 | 5169 | 315.32 | 0.0610 | 144.0 | 0.0279 |
2 | 3451 | 162.57 | 0.0471 | 132.1 | 0.0383 |
3 | 3012 | 144.79 | 0.0481 | 129.3 | 0.0429 |
4 | 3192 | 143.47 | 0.0449 | 130.1 | 0.0408 |
5 | 2427 | 111.51 | 0.0459 | 114.4 | 0.0471 |
6 | 3685 | 157.77 | 0.0428 | 165.7 | 0.0450 |
7 | 3288 | 134.76 | 0.0410 | 156.6 | 0.0476 |
8 | 2925 | 148.49 | 0.0508 | 127.7 | 0.0437 |
9 | 3251 | 153.67 | 0.0473 | 138.5 | 0.0426 |
10 | 2283 | 79.10 | 0.0346 | 124.1 | 0.0544 |
11 | 1872 | 87.69 | 0.0468 | 84.9 | 0.0454 |
12 | 2039 | 63.59 | 0.0312 | 113.1 | 0.0555 |
13 | 3683 | 218.64 | 0.0594 | 126.2 | 0.0343 |
14 | 3440 | 153.85 | 0.0447 | 111.5 | 0.0324 |
15 | 2966 | 157.68 | 0.0532 | 111.8 | 0.0377 |
16 | 1959 | 86.90 | 0.0444 | 93.2 | 0.0476 |
17 | 1732 | 69.70 | 0.0402 | 97.0 | 0.0560 |
18 | 1427 | 61.22 | 0.0429 | 57.6 | 0.0404 |
X | 2347 | 144.29 | 0.0615 | 128.4 | 0.0547 |
Total | 54148 | - | - | - | - |
1) The physical size is based on Sus scrofa Build 10.2 (http://www.ensembl.org/Sus_scrofa/Info/Index).
2) The linkage map is based on USDA-MARC v2 (A) (http://www.thearkdb.org/).
SNP | Traits | SSC | Location1) (bp) | p-value | Nearest gene | Distance/bp |
---|---|---|---|---|---|---|
WU_10.2_17_45522054 | D100*; ADG100* | 17 | 45522054 | 5.78E-08; 4.37E-07 | SOGA1 | within |
ALGA0110960 | D100*; ADG100#; D115*; ADG115* | 15 | 35228926 | 7.79E-08; 3.47E-06; 2.70E-07; 7.67E-07 | GLI2 | 38777 |
MARC0014829 | D100*; ADG100# | 17 | 51033200 | 1.19E-07; 1.77E-06; | SRSF6 | 479795 |
INRA0050471 | D100*; ADG100* | 15 | 140897463 | 3.83E-07; 4.68E-07 | NYAP2 | 256423 |
MARC0061404 | D115*; ADG115* | 15 | 140308646 | 1.02E-07; 2.03E-07 | NYAP2 | 225833 |
ASGA0019176 | D115* | 4 | 33852153 | 3.01E-07 | ZFPM2 | 380829 |
ALGA0003158 | D100# | 1 | 53964692 | 1.73E-06 | NA | - |
ALGA0113286 | D100# | 8 | 142733110 | 1.93E-06 | ARHGAP24 | 85941 |
MARC0111602 | D100# | 4 | 32117997 | 3.26E-06 | RSPO2 | 151369 |
WU_10.2_12_10905724 | ADG100# | 12 | 10905724 | 1.86E-06 | MAP2K6 | 233768 |
ALGA0093561 | ADG100#; D115# | 17 | 20006406 | 4.65E-06; 6.00E-06 | PLCB1 | 145494 |
ALGA0053672 | ADG100# | 9 | 75482434 | 6.03E-06 | C7orf62 | 68647 |
ALGA0003143 | ADG100# | 1 | 53604351 | 8.93E-06 | NA | - |
WU_10.2_16_54456039 | ADG100# | 16 | 54456039 | 1.38E-05 | CPEB4 | 357499 |
WU_10.2_8_970500 | D115# | 8 | 970500 | 2.56E-06 | NA | - |
ASGA0105121 | D115# | 8 | 19299981 | 4.90E-06 | NA | - |
WU_10.2_1_11220855 | ADG115# | 1 | 11220855 | 6.60E-06 | SNX9 | 32725 |
H3GA0004299 | ADG115# | 1 | 283645137 | 1.07E-05 | SUSD1 | within |
1) Derived from the current porcine genome sequence assembly (Sscrofa10.2) (http://www.ensembl.org/Susscrofa/Info/Index).